Legal item names (gene, gene product, microarray probe) for all data types supported in EasyGO

Please note that following name lists maybe incomplete compared with actual name lists, as items with no ontology annotation might not be included.
If you find any of the item names inapropriate, please feel free to contact the administrator.

Arabidopsis
Meyerowitz Lab Arabidopsis Operon Array Version 3
Agilent-012600 Arabidopsis 3 Oligo Microarray
Arabidopsis OAR27K array created from a set of 27K Operon 70 mer oligos (Yale University)
Arabidopsis gene locus (TAIR)
Arabidopsis Affymetrix ATH1 probeset
Arabidopsis Affymetrix Genome Array (8K) probeset
Rice
Beijing Genomics Institute rice genome oligo set V1.0 (Operon)
Agilent-012106 Rice Oligo Microarray
Rice Affymetrix Genome Array probeset (KOME annotation)
Rice (Japonica) gene product (Gramene/UniProt)
Rice (Japonica) full-length cDNA (KOME)
Rice (Japonica) gene locus (TIGR)
Rice (Japonica) gene locus (eg: Os11g0702400)
Maize
Maize Affymetrix Genome Array (GeneChip) probeset
Maize Oligonucleotide Array (TIGR & UA, GPL6438)
Other plants
Barley Affymetrix Genome Array probeset
Citrus Affymetrix Genome Array probeset
Cotton Affymetrix Genome Array probeset
Medicago Affymetrix Genome Array (all probesets)
Medicago Affymetrix Genome Array (exclude bacterial probesets)
Medicago gene models predicted from BAC seq
Poplar Affymetrix Genome Array probeset
Populus gene models
Soybean Affymetrix Genome Array (all probesets)
Soybean Affymetrix Genome Array (exclude fungi probesets)
Sugar cane Affymetrix Genome Array probeset
Tomato Affymetrix Genome Array probeset
Tomato TOM1 cDNA microarray (Cornell)
Wheat Affymetrix Genome Array probeset
Chicken
FHCRC chicken 13K microarray probe
DEL-MAR 14K cDNA microarray probe
Chicken Affymetrix Genome Array probeset
Chicken Ensembl gene product
Chicken RefSeq gene product
chicken UniProt gene product
Bovine
Bovine Affymetrix Genome Array probeset
Bovine Ensembl gene product
Bovine RefSeq gene product
Bovine UniProt gene product
Porcine
Porcine Affymetrix Genome Array probeset
Otherorganism
Silkworm gene names (predicted by BGI)
Silkworm long oligo microarray (CapitalBio)
Streptomyces avermitilis (protein coding genes)
Streptomyces avermitilis microarray (Agilent)
C.elegans genes (WormBase)
Agilent-012795 C. elegans Oligo Microarray (GPL2875)
Agilent-015061 C. elegans Oligo Microarray (GPL7727)

This page last modified: 2008-12-12

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